Scaffold Ga0247591_1019433

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247591_1019433

Scaffold Ga0247591_1019433

Overview

Basic Information
Taxon OID	3300026434 Open in IMG/M
Scaffold ID	Ga0247591_1019433 Open in IMG/M
Source Dataset Name	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 53R (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1232
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031121	Metagenome / Metatranscriptome	183	Y
F085742	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247591_10194331	F085742	AGGA	MQIWSTNSGWFQVFKYQNNQFINWSNNKVLDVRGGKDEEATPVQMWGNNGSKAQIWNVVYIDTADKDRTKGFNKDFGFHINRPFYLRSRMPMKRVAECHGANNVWLKRWRKNTTAQQWYFDEVSKTIKNNHWKTHSLDI
Ga0247591_10194333	F031121	N/A	VDGNQNRTDQRWRVVYLDKADKIETKGLNEEFGFHINRPFYIVSELPFNRVAEMLGGTNMVLKRWRKNQRQQQFWFDEKSKTIRNNYWKNYCLDIQSNGNSNNLRTTSGINSRWW

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