NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257146_1063974

Scaffold Ga0257146_1063974


Overview

Basic Information
Taxon OID3300026374 Open in IMG/M
Scaffold IDGa0257146_1063974 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)597
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069142Metagenome124Y
F077585Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0257146_10639741F069142N/AVKLTDAQRSHVEELLRNRPQWFKEKILADIAAEERRDDEEGTPRAGLSAYTLACLESELGIM
Ga0257146_10639742F077585N/ASIPKGTLCARAAKERWSTERIEGQTLHDNQITLSEDPRLAEIQALVHDCKLAALEAEARTAKALALKAAKAVESIEINSMEGITQAQTYRSNLWPSVSPLIKPALEAAQRGERLVVSEETKKYVEQLKTLM

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