Scaffold Ga0257146_1002799

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257146_1002799

Scaffold Ga0257146_1002799

Overview

Basic Information
Taxon OID	3300026374 Open in IMG/M
Scaffold ID	Ga0257146_1002799 Open in IMG/M
Source Dataset Name	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2948
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.23	Long. (^o)	-122.22	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038364	Metagenome / Metatranscriptome	166	N
F087493	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257146_10027993	F038364	GGA	VAGGPASPDVNAECSLSYSFAEIFLVGLLMDLKTQVDAPQEQFLAAKLRKAFDEVSYSFEKILGEVRGDSNLVLAKQAVNQLQISLNQFENLLKEGGVTVGSCDSIKYLYQEIEHPLSELRRYFMKEPSEILTDKAGVVYVNALKASFRRLMDIADEMDEGHSSILKSAL
Ga0257146_10027994	F087493	N/A	MPVSKIRKYLDDLKIQADAALPRDIDISGAPKTREPKLPAALTGPEWKDKRTELTAKRNGLSEQFEVTPNNIQLGQEIKGLDDQIAECTEHMRLKY

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