NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257173_1023912

Scaffold Ga0257173_1023912


Overview

Basic Information
Taxon OID3300026360 Open in IMG/M
Scaffold IDGa0257173_1023912 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)781
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044521Metagenome154Y
F044930Metagenome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0257173_10239122F044930GAGMIGLDSWWDEPAYKNCNTLHLRGLFIFRKLREHDPAKFQDVMTDLYRDDQPDPQDIGRFEWQTILAYMGASQDEITDVQTRMGRRK
Ga0257173_10239123F044521AGGAGVEQGLGSSTWWDEAEYRQLGTVNDRALFILDKLIKRDIARFQAAWTVAFPGRLMYEPHQRQPDEVTRGPWLVILTRMGATREET

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