Scaffold Ga0257173_1010965

Overview

Basic Information

• Taxon OID: 3300026360
• Scaffold ID: Ga0257173_1010965
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1035
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014300	Metagenome	264	Y
F029840	Metagenome / Metatranscriptome	187	Y
F096941	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257173_10109652	F014300	AGGAGG	MDRLRKRFVMLVVSAALILFASFLAAQGPPGCANVCWQKYTSDVKACHGDPGCLANARAAALACVQGCGLPPR
Ga0257173_10109653	F029840	AGGAG	MLRRIPKVLLLVALLAAFAASIAPTFGRSHTCSCYRSGDRQLLPQVGCHFNPKTSQCVNTGCPGTCY
Ga0257173_10109654	F096941	N/A	KHGIRLSDTLADPPYRTFAQLGLARVPNTVLVGAEGRVEKVWAGRLDQAGWNTMFTYFGERPEMASTLQSQVGARTTDCESEPSQTSVKSCK