NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209057_1002986

Scaffold Ga0209057_1002986


Overview

Basic Information
Taxon OID3300026342 Open in IMG/M
Scaffold IDGa0209057_1002986 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12710
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081417Metagenome / Metatranscriptome114Y
F104854Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209057_10029863F104854GAGGMPALTGTMVPPQNKLTASVPAMSDAVATPVPTRSVPLRKPTSSEVASKIVSGLGVFALGVVLGGPLLYFGWTVAGTAALIFFGGGGLLVMLFSRDEVSACPFCGAALDNLPKPNADGVPRPVQCRKCWEYSGLQRGFVSPYNPNAVEERPTFRSPLAQSVVWPRGCVQCGVEPTRFDEVGTFSVNKGLLVVGAVRVKTFKLPGVPYCAAHKKAVEMKTEIGNKLFLDWRSLAMMRRYMAANRGQFVESSSSGKS
Ga0209057_10029868F081417AGGAGMGENPTPRSIWWGRADWFVFVPWFLVLASFWIYLFGPDRAPWTEAMHEFYGMRHTAEIHTPWVMLGSLLIILYSFTLFLRRRLLFGRVARSWTIAIAILFIVLAAATGLQALATYASSFL

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