Scaffold Ga0209057

Basic Information
Taxon OID	3300026342 Open in IMG/M
Scaffold ID	Ga0209057_1002493 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026342 Open in IMG/M

Scaffold ID

Ga0209057_1002493 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14119
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

14119

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013998	Metagenome / Metatranscriptome	266	N
F014491	Metagenome / Metatranscriptome	262	N
F016384	Metagenome / Metatranscriptome	247	N
F019978	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209057_100249313	F016384	AGG	MSLTRNLDFCQSGDGSKAWSEVLGLREDFKSHLAWVMGLGRLSETFSRHAVPNYLVRVLHPLSQSLRVNLLLGMLPDCFLEVRALTEQLARAFQADLKFSKEASFTSKLSRLDVREPSLYKLTGETDTSVLPLLSELGHGWVRMDQPLTGMGASLPVAAASITYTTRDIPELLRLTSAVKRFRELLSKTMSQWSSKLDRKDSPPAPKGS
Ga0209057_10024933	F019978	GGA	LPEKKRVPPWERAQLSFTLAERRRLRKVEENERPGKARLLDLEENRKRLAEIRKHFCPDCQRYIQSDQLPKEERKIGEEQGFCKCARNAPKP
Ga0209057_10024938	F013998	N/A	MRLKMPLKMHRLLSLLAFVLAMIGGLLVVVSALGGLERLSIGSLAVNGLVFLFGLGAILGGWLIYTGIRKLGGIITLLAGIILFVLTGGAGTSVLLVIVAGVLGLVAAEMKPWWAFWR
Ga0209057_10024939	F014491	N/A	VRNEPHRRSSLNVTPGSPKGSWHNTAMILLVLASLAMFGTIAYTIALQEITNSAISYITGLLISVTGILLGLSGLTPQSKSLERMKLQVTLTIATLLWLVAVVMIAQTAEPFTFAASTAVLRYLFLVGIALFTTLVVMYSTATIEATRQRLMAERAAKSSQPGRTTD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209057_1002493

Overview

Ecosystem & Geography

Associated Families

Sequences