Scaffold Ga0209804_1017380

Overview

Basic Information

• Taxon OID: 3300026335
• Scaffold ID: Ga0209804_1017380
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3781
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001545	Metagenome / Metatranscriptome	673	Y
F001901	Metagenome / Metatranscriptome	620	Y
F042250	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209804_10173804	F042250	AGG	MASVPHTPGTGVLRRDGVIQTYLGGVLPPRALADTRRSAELLIDGHSSYLDTLCQALSGDETCDGFEAVPADHELYDPEAEQYFAPALTAWYRAGVLVHPVVPSTGTT
Ga0209804_10173805	F001545	GGA	MAVLKLDSWGHLGEQGTPGGHTPEPSRCYLSRMPRDIDVVGVWHGMPYQVASLSSTANGVIVACGPTGRHTTYPKTGHRHVKAPSSGTSTWYERQVLSDVTLAQPLQVIAFSGAKPPAWAKPHADRPSHDSFIFQVQADGQVRLALVGVREADDAVIVVTKQSATAHRLFRRYAPNVLIWTVPSDA
Ga0209804_10173806	F001901	N/A	PADGSPPQELPQQMVGQKLISWPGAMPEMQPAEPAKNLASKHYYHRYVLNPDGVSVYVPEGRDAESLPEAIKNEIRRQLKGQS