Scaffold Ga0209804

Basic Information
Taxon OID	3300026335 Open in IMG/M
Scaffold ID	Ga0209804_1001351 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026335 Open in IMG/M

Scaffold ID

Ga0209804_1001351 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16041
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (71.43%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

16041

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (71.43%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F010312	Metagenome	305	N
F012762	Metagenome	277	Y
F014110	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209804_100135112	F012762	GAG	LPTSHQYDPALGTIDSFPTILHGRASFSFDINPESLQKALVSALASLRANPKSREITLADRDGYLNGQLTFRLGIGNGDSFDILDSREEERVMNRIENRGPFKMLDLVFQLHYSVSDGRRHRVHEDHYILRLVFQLGRVEILVHHLKGIRRVEPDELIRLMIQELNVELTRDRYSQIGLEAVDIT
Ga0209804_100135114	F010312	GGCGG	MASPKKELMMLRVFRLTLPAALLVSLTWMTLFTDSARQAVINSLGANANVIIFILGLFLVVGLYWVMGVYERKILYENHRSRPAF
Ga0209804_100135117	F014110	N/A	LRDSGAINFKPKNGSKPFGREKKEQQTVDLARLPGKIGSAVDFLREHVKSFNGRVSTKGNQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGILEIVPPHLATHPKQGAATTPPPAAATMPYLFPGAPVPVAPDKKRRKKS
Ga0209804_100135118	F006299	N/A	LTLSAEVVTREIPEIVEFNKLKSRTAEEALADLVSELGIVYVTALTRQGCSGCETQRPLFRTLAEKMIQENPEKIRFRSYHVNYQDGDKRESWNSKRIFGHAAYPTYTIHVKSHVGPLEIYRSVYPPMEELEKQIKESFELAEFYKVEAETAARSRTDDL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209804_1001351

Overview

Ecosystem & Geography

Associated Families

Sequences