NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209158_1009071

Scaffold Ga0209158_1009071


Overview

Basic Information
Taxon OID3300026333 Open in IMG/M
Scaffold IDGa0209158_1009071 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5016
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007493Metagenome / Metatranscriptome350Y
F026411Metagenome / Metatranscriptome198Y
F027294Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0209158_10090712F026411AGGMKGQEQKGSAPPMGTSPATDCRAEFIFYARNQSRKLGSVEVLGDYTCDFRRPDWAHRWTDWNSGRNQYLNLFLCAKHARELGLL
Ga0209158_10090713F027294GGAGGVRVFRGFAIALMLALISLGIFILYNSMARRNAAEADSVIAGAVLFSLALTLLYYISRPTI
Ga0209158_10090717F007493AGGTGGVIGTTTALIGAAVLLVLILVWVRGQSASRHLPAVMDEWLTGQDDLPEACPPEFVSQIFSSRDSEFISQLESVDLKRLFLRERNAVALLWVQQTAATIRRIMRHHLEASRLSADIKFAMEARIFLQYAQLRLICGALFLLIGLAGLERLHWMALRADKLTQRIGNVLREFESGARSREMDGVQS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.