Scaffold Ga0209803_1007510

Overview

Basic Information

• Taxon OID: 3300026332
• Scaffold ID: Ga0209803_1007510
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6023
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023940	Metagenome / Metatranscriptome	208	Y
F046901	Metagenome / Metatranscriptome	150	Y
F091903	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209803_10075102	F046901	GGA	VIVKGEKEQFLDWLRWGVESDAIRFPPDTGSIRWPSMSLENIFPQAE
Ga0209803_10075103	F023940	AGGAG	MTNAHLSFGWLTYVKSTEKTTTSIKLRLDRFIGEVVPDPPRQAKAHLISVIGGDTQISAISAAISMGDRFMVEGPGVQPIRICLERNAQCFKGSLQLAGRKKPLRHLIGMSEEFASSTMSASSGRTLLAGSDKRFV
Ga0209803_10075109	F091903	GAG	MHRQDDSRHPDWLQSRWDRQKRDTAARIEVAVTGLQKDHVEVTYANICKRVGLLYGLSISPNTIKRNELAYQLYLANRRPPKRRQLREPLLIELINSTSDLEKRSLRSKTSRLRRESKDSLIARLISLERTVTKQKVAENLLREEILRLAQAGSR