NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209803_1003494

Scaffold Ga0209803_1003494


Overview

Basic Information
Taxon OID3300026332 Open in IMG/M
Scaffold IDGa0209803_1003494 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9432
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030030Metagenome / Metatranscriptome186Y
F046962Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0209803_100349411F046962N/ALEETANVGYPPDTPSQTVPQDTMTDNQLKGLLAELISSSASLNVRVWLDGVYTDIENAGTHREWMKGREVYFKVEGKVDGQNSPEEAASRRA
Ga0209803_10034949F030030N/AMSIGENAYDILSNEAKNRDVTVQQLLRAVVVPDWIKQNSNGQPIGENDSNLLQPSIYGGESRNSRALVSPVARLRH

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