Scaffold Ga0209473_1005550

Overview

Basic Information

• Taxon OID: 3300026330
• Scaffold ID: Ga0209473_1005550
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6636
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018437	Metagenome	235	Y
F023825	Metagenome	208	N
F053212	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209473_10055504	F023825	N/A	VKRTTLFNVTSFLATSLALSCGGRDRTHSPTCGMAQLIGPSLIQDQLRFLPFVLTEPPRGLPGSLPARVAGNAQQSTVAISYSGQRLAMAYQGPNFPPYPSDSTVYALLVVDDSTQRAQGLLLYEGQRPPKSYPQLGTVSGGDKTIPLYGVRVDWRSVSNPHCPLLGSPASTP
Ga0209473_10055505	F053212	N/A	MIHPYGVVATVLLWTAQGTPLDGTWLLTRIFRAGNSATTRALPLDSTVYIRMSLESHTGGWFTGSLYRRYFGQPERTKLGGGPLRGTGRWILGADFDHPVSQEAKTAAWLVGDTLRLGTPFVPDADSLEFRRVPRDAPDPTTVLEVVTPR
Ga0209473_10055507	F018437	N/A	MSRRVARAGLVAAALACNGGLQPTPAAPGIGGVVTYRGAVPDSTLAVYVVAYRTFPHSRDSLFTFQPPVQSLQQLPLGGVTAPYSIPVESGRYEWVVAVWVKQGFTLSNADSTLRETGYYRDPADTTRPGVVNVLSQPAQAIDFVIDFDHMHPPCRYYAPPCP