Scaffold Ga0209375_1001623

Overview

Basic Information

• Taxon OID: 3300026329
• Scaffold ID: Ga0209375_1001623
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16850
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004535	Metagenome / Metatranscriptome	434	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209375_10016237	F004535	AGGA	MQVGGVGLARRAARAVAAAAGLMVLLALQPEPARLAETAGSHARALIVSDQARRYLLLQYRAYPTEFMGCMIGEIHGNAVIVRRIAPADVEPGHSTETTVVPKQTCEDAGWAGTVGVIHSHPQGERCWYFFPGTRVASSDAHTFARQIYPVDAIMCGNRVVWISRDMVQQQVPLSGADLPPGAAAPVRQQRGNQVHGGAAASDGSDYGSR