Scaffold Ga0209802_1006877

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1006877
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7074
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002514	Metagenome / Metatranscriptome	552	Y
F005811	Metagenome / Metatranscriptome	389	N
F020515	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_10068771	F005811	N/A	GGRMIRPENRRSWVPRTAELTLAAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIPALATVFVGSLGMALGQPSFYQVFGLPGLLIPLAAVGAGSIAFHYRLGPIVPWAYVLAGAVFYIALSNGGTLFWLVPYVLVIVSLPVAFRLKNNPRIGLLTFYIAMTEQVTLNILSISILSLTGPVWSVITPLMYVERAIATLGGAAGIVALKSGLGGRLDLMDQSPREVRQ
Ga0209802_10068776	F020515	N/A	MTVVTVEKDMRPCEALCPKHGIQCKLKMFEQDAFPMHAHMIDQKMCTWKK
Ga0209802_10068777	F002514	AGG	MRDRDVMNLLDQLELYTLETSRKETSQKDYWLFVYTSMKSGLLLTKNMEKHLNYKLKALGVEV