NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1004411

Scaffold Ga0209802_1004411


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1004411 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9191
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035684Metagenome171N
F079864Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0209802_10044113F035684AGGMGLLPEFFTLLGIEIFAAMSLVSVLLDRDIPSSAQWLFQGAAALGLGQLVVTEGFGTSSVIDASRFWISIFYLALSVCSVAGLNVYLAAVRRKTAIASVFSGTITTPTVTVSVLSISSYLSGIDVRFTPLTIVILIVPALLVGVGAYGFLHKTFKRIGKSTGPELSPASVSSPVEAPKVYESLDLTAILGEWEESQKKDRVA
Ga0209802_10044119F079864N/AVDSPERGEKTRGAVFLIQLRRYVLLPFLAALLFVTMFDFPVHALNETYSLTASVARLQESNTARVLLTLNVSNANTFSNYAFTWNVKDPGGTVHQATNTTNAPHAASFVESVAYPGKFGSGANLAYVGVYVVWVNQTQPLVVGSTGVASGQFQVGLTDSLSYQRLLPVSIKAVNYQPNGNVTIKISSLSGLVTGFPLNKTADNTGLLSYDWLIPVSLPVGDYTLTLTGIPVKSPPDVQSFSITATNVTISSLVISRSLLQTSQTEDFRFSASYPGGSQVRTGSVNLRLVEADGQTSHYVTMAYSSGLNAFHGTFQIPLSSEVGPWVATVEVNSFDDGYGNKGPISGVLKPFTVSPAILTVSAITNYNNYTIGNIVVIYASVVTPGGYNFTSGTVTATTYHSSSQIGGPLILFYDQSRGKWIGSYTVNSTNPAGIWQIQVNASDIYGNMGQGSTSTLVTVAASPPQQSSTFNYLLIAALVLIAALAIIVSWIIYGRKRILRKVLKVDIEAIHAEAKKVESQDFFKKVQEQLKQQRKENDGTPKG
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