Scaffold Ga0209802_1002898

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1002898
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11742
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024269	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100289810	F024269	GGA	MTVVEAGAVAEAVRVTVALHVGLHGLLENAEAVTPVGSVVRILKVTGEVVALAFSVAVAVSTLPTAPSVMLRLAGLAASVKSKNPETTRVNVAV
Ga0209802_100289811	F024269	GGA	MTVDEAGAVADAVKVTIALHVRLQGLLENAEAVTPVGSVVRILKVTGVVVAPVARVAVAVSTPPAAPSVIGSVDGLAVNVKSKNPETSSVNVAV
Ga0209802_100289813	F024269	GGAGG	VTVALHVGLQGLFVKAEAVTPVGSVVRILKVTGEVVALAFNVAVAVSTPPAAPGVMVNVEGDAAKVKSKKPETDRVNVVV
Ga0209802_100289815	F024269	GGA	MRVEDAGAFLAAVKVTVALHVGLHGLFVNAEVVTPDGSAVRIVKVTGVVVAPVARVAVAVSTPPAAPSVMLRVEGLAASVKSKNPETTRVNVVV
Ga0209802_100289819	F024269	GGAGG	VTVALHVGLQGLFAMTEVTPVGRVVRMLKVTGEVVADALRVAVAVSTPPDPPGVMVRVDGEAASVKSKNPETARVNVVV
Ga0209802_10028982	F024269	GGAG	VNVTVALHVGLHGVLENTEAVTPLGRAVRILNVTRLVVALALRVAVAVSTAPAAPSVMDRLAGLAARVKSKKPDTTSVNVAV
Ga0209802_100289820	F024269	GAG	VPPVAWIVIRVLDAGAVAEAVRVTVTLHVGLQGLFVNADAVTPDGSVVRILKVTGVVVPELNVAVAVSTPPAAPSVIGKVEGEAVRVKLKPDWTISVKVAV
Ga0209802_100289821	F024269	GGA	MTVEEAGAVAEAVRVTAALHVGLQGLLENTDAATPDGSVVRILKVTGVVVAPVAKVAVAVSTAPAAPSVIDRVDGLAARVKLKNPETTSVNVVV
Ga0209802_100289822	F024269	GGA	MTVDEAGAVAEAVSVTVAEHVGLHGLLVKAEAVTPDGRVVSIVKVTGVVVAPVARVAVAVSTPPVAPSVIDRVDGLAASVKSKNPDTTKVKVVV
Ga0209802_10028983	F024269	N/A	VITVVDARAVEAAVSVTVALHVGLQGLLENAEAVTPVGRVVRILKVTGDVVADALRVAVAVSTPPATPGVRVRVEGLAARVKSKNPETTRVNVAV
Ga0209802_10028984	F024269	GAGG	VNVTVAMHVGLQGLLENAEAVTPAGNVVRILNVTGEGVPEVRVAVAVSTPPTAPSVIVKGDGESASEKLKPGCTTRVNVAV
Ga0209802_10028985	F024269	GGAG	VAWIVITVDDAGAFFAAVNVTVALHVGLQGLLENAEADTPLGRAVRILNVTGDVVALAFNVAVAVSTAPRAPSVIDNDAGLAASVKSKNPETTKVKVAV
Ga0209802_10028988	F024269	N/A	VITVVDARAVEAAVSVTVALHVGLQGLLENAEAVTPVGRAVRILKVTGEVVALAFSVAVAVSTPPVAPGVIVSVEGEAARVKSKKPDTTRVNVAV