Scaffold Ga0209802_1000988

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1000988
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21743
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006655	Metagenome	367	Y
F009201	Metagenome	321	Y
F104063	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100098820	F006655	AGGAGG	MRLARRAVLLVVFSVLTSAATAYAQRAWVLWEHSYEVWVDSNKESHRRDGYWKKVTATAAKADCDDRTVREARAEYYTLTGQGIGATLAGSQVGFDQSNTRYKRGYHSFECWPDTVDPRGAKGK
Ga0209802_100098821	F104063	GAGG	MSRAAVAAGIVGLLLFVEPPLDGLAGYLLFQEGHRIVGTIVFSVNAVIAAGVVLSFLPEWFHPPGLTLAAAIAHYNVNVWLGLVALAYAVAVRAWPPALVLLVGAVLVAIGGRGVVAWLSSGRSKL
Ga0209802_100098836	F009201	AGGAGG	MVPTVSLSFLNRGKVKQVCRVCHEIAELKTDRLCAVCVRIKAQIRSRFPDAVRGTMTIPAEQCTRAGCSCDACGVRTLDPHPFYPSASARVDRRAIHFHPRCHELWIEAVTGLVTHQDPSIDIGRG