Scaffold Ga0209802

Basic Information
Taxon OID	3300026328 Open in IMG/M
Scaffold ID	Ga0209802_1000956 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026328 Open in IMG/M

Scaffold ID

Ga0209802_1000956 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22224
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (68.42%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

22224

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (68.42%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031048	Metagenome	183	Y
F040029	Metagenome / Metatranscriptome	162	Y
F045026	Metagenome / Metatranscriptome	153	Y
F069926	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100095611	F069926	GGAGG	MKKLVIGIAVLAALLTSLFLSYWFDPGRVIWTKDGTVAAVHQYPDSNTGTNWNVLVYIYQQNDMGYLVNTGYVALNGFGTQGHGNYCWNDGNGKCLNVPLSFSLNQTLAVDALNDGNFMIRNSHI
Ga0209802_100095613	F031048	N/A	MKLKPKRQVRLALLLLSTSIIMITSLLGYNRIAYEFPLAVGNTGQSALGPPTSAGVGIVFAMIVVATILGFGAVLSIFGSLRNVSNRISEIVIPKPSPKDSIYESQKEAEWEEASTQTENKATDDEILKALWHSKDKKTGTAE
Ga0209802_100095614	F040029	AGGA	VALAPEFFVLLAISIFLAMSVISALLDRHLSSILQYLFQGAAGVGLGELLLSQGLSSPTRVWAGIVYLAFALSSLVGVNIRLAIVRRGMNIASMFSQMMTVPVVMISALFLSSFLGNGGDLVFSPASIVTIAVSVLVADLSIFGLLREYSRHSSIRSGLVSFSTSAAPASTGSVGTTLDSQQLSEQDIALHHDSTQGEDWEESPSKEKE
Ga0209802_10009563	F045026	AGG	MPENQKTRANGLVIQGIPSLEMRMREVRAIGRRMLEPDGQRAGDAQAASGQVISQTEIGNGAIRQSRVWNRLSDEYPDPANALISSVQEMERIHD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209802_1000956

Overview

Ecosystem & Geography

Associated Families

Sequences