Scaffold Ga0209802_1000465

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1000465
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31280
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (61.70%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004152	Metagenome	450	Y
F010757	Metagenome	299	Y
F040544	Metagenome	161	Y
F054745	Metagenome	139	Y
F093626	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100046511	F004152	GGA	LTKIVADDLQNDEVSSLVEYMTAVSSGQIAQHKKLVEVTGLSNTKIKFLVNKFLYTQHLPGYRVLETAGSFEIVRLKPEEKRTEQHETLSPTMLPESIGLGGLPRWGKPSDMIDWEGQPPPMKKERYKKQ
Ga0209802_100046515	F054745	N/A	LVVFVYVPVHLNTIQVLKDEELRTLLRKRGYRILELSYSSYSDRKRDELYREIMSGLGK
Ga0209802_100046538	F010757	AGGCGG	MSSVSQVRIRARLAKPPEYVLVKFPRYEREFFLGYANFILGLILSQEIRELLSTLVSAEGIRSDRSIDLRVMIFPARQLRRQPSRILYGSYSHSLAQISLYPLRISKDRIRREGTALFASHLNDLSIAQRKLIGEIASAAISTLIHEVLHVKFQQRSLSRYVEEGMVQRLEKTYMRQWADKLDGVLRSQFSSGIDNGSVGNEP
Ga0209802_100046546	F093626	GGCGG	VVAWWAAGAGVGTINLTLVVSGLGIVGLAASAAASYVVFTLVNRLNMHSSRTRALFWNTISELESRIGTVGQSALLPLSSAQEGFHRLSRGEHERSAVLWALLASVPIIGWIFLLAALWYLSRDMAKHNRLEELVLEDVDRTMKGAGLQGVSVKHAPIGSRDVLGIAVVVVSLVELLSVFLLGLAGCLTLIYLTVGAFSLVWLDLSMRDPIPHFVFHSQFEPEILRSLPDASAKAGAVRV
Ga0209802_10004659	F040544	GGTGG	LSQTKPNHATSFAEEGTVYWLMVSAILLGYLTLAVAVAAGILYFGFTLALAIVEAILAYSCWTLKKWGFLASTLSAIVVGGLAFGILYSPIGDLLLLLQLQVVLFAYRAYREPARLGDQVQNASIPL