Scaffold Ga0209802_1000380

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209802_1000380

Scaffold Ga0209802_1000380

Overview

Basic Information
Taxon OID	3300026328 Open in IMG/M
Scaffold ID	Ga0209802_1000380 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	33841
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (44.74%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040558	Metagenome	161	N
F042817	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100038019	F040558	N/A	MTSFIRLTPKNILRIILLVVFPWLPPYLFEKTDFYFHLTHQPDWYYNLSGNRLFVDMASFAVWGIVAAYLLRPRWAVIQIALNALLVWFLFYVACPIYAPGGVWQPECYYAGPDGLVGFRLAGIMFCYGALPVLVRAASKGDALDHRIRPALAVLSGVILSVVMIWYPLSAWFSGVTYLPLFLTFQTVLLIGVPQIATGILAARMGRSLKIGATSGIVSLLFMSAVFWTPECPGCDRSSLYLFAPSWGIFALAGSITELGLPSLLRLPKMPGWWGAIRMEDVRRVGLALVLTVSIWTLVARDFWDPSVLYASSISSNPGELTLGQPFYPYVGAYYDSSQYRICCVEIGVSMSMANPRILAPDNFLMVGMGVQSPNCCVDGWDFGWRADVFLLPNSSMIISGSSWETCDGNANCGGYMWEHLWYHSQTILNPQNLSTPIYLQMKWEPVTVDGQPRSLVNWYYNTTGVAWTKFGSFLPDRRLGTYFDIGLSGGPASEIPQGSAFLYQFGVASKRPVSGWSVSLFNPSFQYLGTWRTMERANIVQGDFSYWKVNYRWGGRPYPGVTARANLLDSSLPVDTVTFSYTGGTMKDFTPLW
Ga0209802_100038032	F042817	AGGAG	MILDPCYSLVVNQSVTSALAAEALMAPVKRIIVDAAQALAATVAELRGPLSATIARRHCLVERSETTSLDLFASLGLQALMSAMTMGWTLESGWMMRRIWMSARSSVRIRMGRTCMMLWIGMRVALGFRLGFHVDSSRKKSRPVIVYF

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