Scaffold Ga0209802_1000350

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1000350
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35513
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000186	Metagenome	1702	Y
F001899	Metagenome	620	Y
F003458	Metagenome	485	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100035035	F000186	N/A	MERELAFKLQEACVCYQTQVEIPVTTADFYFPLETRPLIVFVDGSVHLGKTQMFKDEELRTLLRKKGYRILELFYNSYSIEKRDELYLQILENVGKSRSEA
Ga0209802_100035038	F001899	AGGA	VPVICGFRFEVRPEDEVVELQADHHIVRVCVDCLTLLTVHRRIHHMKVEKVIVEMAERRPLVAFA
Ga0209802_10003508	F003458	GAGG	MAESRIPPGASLLLIGSGLYWILSSQLISSFTVLTPELFQADSLGASLITVVGIISATVGLWIVKVDFDELRSLFSRSDGWIFTVPLALVAADVYLTLIVLSTNSQIVELNPFVSSAIGIGAAALIPFIISYLALSQGLGLFMLRVGSYLFGPLKSWRYLPFVSICGAAAFGPASNLVLLLDPTAGLVAYLLGTLGCVMLSIFLFTKVEKHDLGKPKFQRP