NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209802_1000341

Scaffold Ga0209802_1000341


Overview

Basic Information
Taxon OID3300026328 Open in IMG/M
Scaffold IDGa0209802_1000341 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36194
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001571Metagenome / Metatranscriptome669Y
F012856Metagenome / Metatranscriptome276Y
F016793Metagenome / Metatranscriptome244Y
F052525Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209802_100034112F001571GAGLALIHRVIVPDEEYPKEYAVLVTESQSIFIRQKKTRGNFWLRREMSYGTALITDVVPKTLEVYQQTSLESLTADGANITVPHEAVISLALKKEEQKPRAYDFFVRLTMRMQREEFQVYDFEMNYRQGPIVETEIKLYMVPLGAYFKPRRQTKSRETILREYAMGALEIFQKVLPAGIISS
Ga0209802_100034144F012856AGAAGGLEKPSWTPIVLSGVIPREATDLLAILVMGIVAVEASLATIGPPVFGSRLWLSLLVVPPTVALSSVSTTTRRTKEELALFAYGGSSWQILLRYFFRGAICALIAFSPILLQGFLTTSSIPELFLQVLALLVVGGLFYSLPSLRRIRSSSFVENYKS
Ga0209802_100034148F016793GAGMTSKARKNKPTRIEKILPLGKVIEFFRRRFHDPYLNPEAELSFTDFQTAFPEVLREELEEALSHWVMRPGAKVLSTKTTDTDGHQLQVWYIHGLHEEHAELEDSMSRGPIQA
Ga0209802_10003416F052525N/ALAPPKTPYDPRALKRKVSSQILELPGVSGIGVPKGRLTVYLEVDSEDIRDRVREVLKAVSPEADVVFMVTGKFSKQDPE
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