Scaffold Ga0209802_1000301

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1000301
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38170
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (82.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003305	Metagenome / Metatranscriptome	494	Y
F006236	Metagenome	378	Y
F019106	Metagenome	231	N
F035244	Metagenome	172	N
F043305	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_10003011	F003305	AGG	MRELTTWEEPRELDTDNEAVISLYDGIKKILEKQPKPKTKPSSGIPREARHILLCGRILKVDIERKLVVITVMKTDGELHQLRIEANQD
Ga0209802_10003013	F035244	GAGG	MSKPASVNFPRINLISILAGALALASVFLSWWGIDASGFGSVVSPRWTLWNGPSMDSIFRGSAQAYPTLTSTSPIIGALVVISALLALAGSFTRNTRPLIGSFILGVLTSIAYLGVVSYAVTNSCNGQSNCLSGPFGTETVFGITLNWGFQIGFYLYLVAGSLTLVGLGFHRIFHKTTPT
Ga0209802_100030131	F043305	AGG	MSTPVYLDLVAMVAPALSLWLLIRQKPSFVGIARRNLIRLNIYFFLILAADIDRILAQNTIATYIMLIGFFLVAMNFGHTAAVVQFCPEARTWGESVKIILKRTMLFPVFLLILGTWLAVTLAFEPVTSSLTSYGSEAYVLPSFPSWYTAFTIVLAIPIILYPSLLLLSSLRRAQTSYTRNSLLLMLSSWLCFPTVGLVIFFLLSPIIPFSYEMGLIISSALYCLLAFSIRTLTGTTRFLKSSLFPQSLIKFGKRYLVLHDTGTRTISFLSSAFRSTIEAGARVVLKSPASWLVEGLSHNDSRFNEWAENGKFVKSSAGSDDKKSGSEGLSDKFGLSQTATVFVRELERQDLQGSMGSMAKESKNPNEPEAEMFLLESSQAPRPQVADFLQRNRDVELVNLSEASDPFSTLVNLDHQKMEGSKILLEYSSNANFEDLVNKFFDEGIANAEMCALFTSKSSKLYRALKGKRMVRMVAASSLVSVPDELPDGEIQIPDKELGLVTSLVTEFYENNKSVALSFVFDSITELIRGERWEQVYSGIKQLIELLSPSTITAIFLVNTETTEPRFLGALRGMFSVQMKLDEVGGQPLRVAKSEF
Ga0209802_100030139	F006236	N/A	ACLVLGLWIISTDFEELSKLFLRNDGWIFTIPIALVVADIYLTLIGLSQGAWEQNPFVASAVLIGPWAVVPFVVSYMALSEGLALVMLSVGKWLFGGARPSKYMPFALICGAASFGPISNAELLAFPGADSGSYSIGITIGMITLSAGIYFHFRRTRMRD
Ga0209802_10003015	F019106	GGAG	VGWRSPVQTLELNIAVSIVSTVGKMVSQVPLLTLARLLVLIGGVVLLIGGILQAIDIGGLTDFNTNLARLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVAHYVKI