Scaffold Ga0209802_1000022

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1000022
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92800
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (72.22%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006839	Metagenome / Metatranscriptome	363	Y
F009739	Metagenome	313	Y
F009951	Metagenome	310	Y
F010906	Metagenome	297	N
F012492	Metagenome / Metatranscriptome	280	Y
F024757	Metagenome	204	Y
F032984	Metagenome	178	N
F036617	Metagenome	169	N
F105712	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_1000022100	F024757	N/A	MSLPKPGDNVKVILLSGETIEGVVEWIDGGGAWVKGAQKSRWVPLEAFQPPPQADDSKDD
Ga0209802_100002217	F010906	GAG	VSQQEDLSNLRNLVGAENVLAECAGVNYTVYVTDSRLLVGKRFGLGEKYVNVPHAEVSTLELITKSLIPPLTYAVLGAIAVFLVWWFPGQARLSLPQAPFDLILIGTFTVFLAAVVATWWRRRVAVLRIGISGTKEPITVKLVPTSKAEGVFKALKG
Ga0209802_100002219	F105712	AGCAGG	MILPAYLNYELFHRLNLDITVSMSISLTSFALGILIFILVVGKERIEGPKKQ
Ga0209802_100002237	F006839	AGAAG	MSAPDSSESSWREHPPLNVEKVEDDSSQYLQEACYYLLKKGLTLEQVSKALEVSEQEATRLYREFESKIASGKREENEIDRNLWEDVYNDSVGNEKITFVRDNGFYHCRRDDLDKMDSPALMAIFETSKKFLDFDMYRRYLDSKPPVGYDPMAMQRQIKRAVDLIEQILKQRWESGETKKNDSLSR
Ga0209802_100002247	F036617	N/A	VAFANIAMTLALLAIYLGTYRKVKSSFTMGLVLFGSFFVVLNLAILVFWLFLFENVSSAGTLVDQASTYMLLVNVGEALALANLLRVTWK
Ga0209802_100002254	F009951	N/A	MLEEKVGKALGEARTKLDAALDHLSKGGTDSEKKVWWAEEATEYSSLLYSLTYGLEDEDPPVPVRKRNAEPIPLVKESSESLRRATELRGKSPLEGYRYLRTAVYKLREAHHILEKARTKKR
Ga0209802_10000227	F012492	GAG	LGVEGEEAQPKKSGSRRYIENLLGWPSEESTGIGVYQTALFTSLLEYFIVLFFGTWLIVEYAYNVYEQQYFGSFNPVFLVAVLMVASGYGFTRLVSTVRTSLRSTRVKKKVEDDY
Ga0209802_100002280	F032984	N/A	MEKATQMQRGLMVRVVLSIITLAAFLAGSLIVVGFYTNYDWFQKIVVILVAMIIAFAALAIMWVTWAGRRGMMGWWRD
Ga0209802_100002291	F009739	N/A	MSEGLEVRRVSLVDLLISIGSAGLAIFSVPTVLNKNSQVPRKTASIPSASILTYFVPLFAISGLDLTAMTIAGQAIVWWLIVALRPVRKLG