Scaffold Ga0209802_1000004

Overview

Basic Information

• Taxon OID: 3300026328
• Scaffold ID: Ga0209802_1000004
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145442
• Total Scaffold Genes: 159
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (73.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001047	Metagenome / Metatranscriptome	793	Y
F013075	Metagenome	274	Y
F015197	Metagenome / Metatranscriptome	256	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209802_100000434	F015197	N/A	MSDLSYKLAELRPALRPVAESAAWVASFVIANAISQEPVYFLILLLVLGSDVLDTSDKSKGLFRDFVAGGITAILALALNDQLGLAVGTVVAVTAVGRLLQKLA
Ga0209802_100000476	F001047	GGA	MRETVFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREEKFTLAIRQFESLMVDFLRLYQPILDRLRSYREGMQKEITSLRSSLATVNGMLEVSKGIEGLAPRVQQLEADGQELDARINEKMKMANKIDDLFNRVRPFQTAGPGQMGRDSLSDVLSGMPKDLFPEPPESGNEKTRKAAGRN
Ga0209802_100000481	F013075	GGAG	LTPTEFLPRAHSRRLGELDVSNWKDLAKGRNASRIDPAIREIVSSLNDKGYKTFSSCSGGHRANLRRRFDRHESGYIAFSPPSRIPFALYLALRRRNQNFMFEAEAVIHDGNGDRRETMYTQLDWQLVDQRKHSLAYYEKLFLEMKRVINRLPGQPDDHKKVLTGLLGKPNLTLASRIVNGQMKRFGT