Scaffold Ga0209266_1000424

Overview

Basic Information

• Taxon OID: 3300026327
• Scaffold ID: Ga0209266_1000424
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33568
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (67.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006542	Metagenome / Metatranscriptome	370	Y
F036638	Metagenome	169	N
F039568	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209266_10004241	F006542	GAGG	MNETELSDLMTAPGFFRFLAQQVKLDPEEVKRIYRLGTPWGLWPPDLDLSYETAEAGVDVFTYLAALQPLLDMDTKEKEAQLAAYEATLTGGKIAQPIPAVRAHVEKVAALSGEDEETICSLLHALYAYRQRVGRLSIEKVGQFMSRHKIEPEKAASIAKL
Ga0209266_100042416	F036638	AGG	MRICPKCRLIASDDPVCPECGWNLAAGGVTGPASALALRYAENLQSMALFTALMFGASLIVSFATTRGNQFLPAVSMSLLVTGLIADAFLLLLIYKTAAIFAEANRWVVGAVLTFPFGTLVFAWLLARRARLGGPVGRRTSSDNDP
Ga0209266_10004242	F039568	GAGG	MAQEPSQSVANSLGFVTFAKCFCINPVYINPVYGGGYYKKRKGWVLIDLVTRAETYFKTLRDAKHHLIRLYKEAAPKKIATQGC