Scaffold Ga0209801_1002424

Overview

Basic Information

• Taxon OID: 3300026326
• Scaffold ID: Ga0209801_1002424
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10894
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051039	Metagenome	144	N
F077145	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209801_10024243	F077145	GGA	MAVDTQGKSAWTGKDVSEREINLLNQRVIQFTDIEDTFLDVWLQLENANLDELAAKIINAGLLFEHYLSQLPNDPTQRSPEEIAQLETYRSDAGSALDEGRAALASTMTTVGVGSNMTSSLASTAIKTGTLTFWSYLAFQEYLAVAAGNILSVVGFGVAAVAELFLGFWLAGYKGATNRYTGRNKTKG
Ga0209801_10024249	F051039	N/A	LPEHVSNPVAFHGKTAWITAFIIALIFLMPFLAISLPSVTLPGTRAMDVTSLKTPTYAESSRATILDENNWTMWSLTAQQFGATLTYSSDGLTLTGSFPPSTQPLALSIVRALTANLTAYPIMYMLINVSPNISYGIRFYSQSSGSAVPLWAESDALSHREGKGQAENVQVNMFQLIESNTGKVYDSTSNVTIYAERSASTQATHFSLQIKKLEFLNFPLLSAPASGSYHAIYVGLGQIQENPSFTLRSVEIRGTINASKGMVFVPYFIDGLSIYQGRVYTLSTVPIDLFVTVAITAQGAKSFSDNLPTEKAAIVLVAASGTFTRLSVENISLNYYSKTAQTSSIPFQDRNGYLNNAFFFLLLPVSVIVLLYGQVRRAKHIANSQSSVSHSDADR