Scaffold Ga0209801

Basic Information
Taxon OID	3300026326 Open in IMG/M
Scaffold ID	Ga0209801_1000008 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026326 Open in IMG/M

Scaffold ID

Ga0209801_1000008 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	175961
Total Scaffold Genes	162 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	110 (67.90%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

175961

Total Scaffold Genes

162 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

110 (67.90%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y
F006582	Metagenome / Metatranscriptome	369	Y
F010755	Metagenome / Metatranscriptome	299	N
F019299	Metagenome	230	N
F025562	Metagenome / Metatranscriptome	201	N
F039576	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209801_1000008105	F010755	GGAGG	MRDSAPHRLTERRQAILRQTSAALRGRPVTLWRVAKGIAVAEVTSRPTPARDMTESDVAAALRTWGLTADDRSLWVVCRPEPSRWHVARVRSDLPQPPPAGIERRSPERLTLELGGLSLGALERLWAAADQATVYLCGSLALLEACVERVREMRGLTTTNRAHLLADLAVVADSIQGALDAA
Ga0209801_1000008112	F004205	AGGAGG	MEAGITLQSQSFRLRERMQEANISHGQEVRADLPNIRVVALAGAAEGQALFCTMGAIRVREILNRGDGGPLPTDVTLEGLRVADSGTYDILNALVSSNGNLRLVVDDQTRVVAGAKIVGAAEAPVPI
Ga0209801_1000008125	F019299	GAGG	MNEQMPIQDWERVQALWRRAGSAGAVVQDAPRQIARARRRLLVARLIESAVAAAAILITAMALRHAGNPFEAALGLVVGVGIGILWIQRIRLREREEAGIAATSPEHLAVLKRVRRQEVRLARFIWIVLLLELAFLTPWWVIGNRVHHRTFVDPGSWLSVWLPLLGMLALFAWSVRLARRARAELRAVERLREQYRGD
Ga0209801_1000008134	F025562	GAGG	MNANSTGKSPWGGWLLHAAVGLGLTAVLAGLDAPRVALLVAVLAMGIAHEIGDGDFRRANGGPWNGVLDVLAFLPAPLVYLVAHAR
Ga0209801_100000825	F039576	N/A	MAKPFLQLAAVGVVGFALWKLASLFFLPFLVFAFKLAAIVGLVLLAIWFFKRNDKPKDDTATE
Ga0209801_10000083	F006582	GGAGG	MAPITLQRLVKQLDKLKPEADAARLKTHDYARWLARMIRRLRERSLDADRAAATVALAEALKRGAITAPMEANPHKRHGLA
Ga0209801_100000897	F006201	AGGAGG	MRLQDKAMLTTVFQALGPERVERGLAAVGHTWRDCFLALALHDGPGMFARDLQKRWRKEYYVGTLIGVSVQMVQAVVRAWDQDETAFRALAAEWLELNRTVETREPAVASAVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209801_1000008

Overview

Ecosystem & Geography

Associated Families

Sequences