NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209801_1000001

Scaffold Ga0209801_1000001


Overview

Basic Information
Taxon OID3300026326 Open in IMG/M
Scaffold IDGa0209801_1000001 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)682544
Total Scaffold Genes658 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)452 (68.69%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Associated Families15

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F000727Metagenome / Metatranscriptome918Y
F001162Metagenome761Y
F002419Metagenome560Y
F002810Metagenome / Metatranscriptome528Y
F003430Metagenome487Y
F004264Metagenome / Metatranscriptome446Y
F007714Metagenome / Metatranscriptome346Y
F009644Metagenome / Metatranscriptome315Y
F009678Metagenome / Metatranscriptome314Y
F020678Metagenome / Metatranscriptome222Y
F029701Metagenome / Metatranscriptome187N
F048909Metagenome147Y
F068627Metagenome124Y
F081196Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0209801_1000001106F000727N/AMKLVIWMAALLSLASCQIRPFAKRTPQDDSTDLAHLVPHGSIDSTLLIPRVITEPSVVLFWLRAADTLGADDRSDTFDDLKYYTEQVAPALEASGIKLLATNADTVYVSTPDAKRRTILLSGLDYPYGYLLVDPGGPERILTGVYADQDLMDELRAYFDLPDDSTSAQPRVTT
Ga0209801_1000001126F081196GAGGVLYYRDAARYRALFRPTFVGRFRERDGRTVLDGRFRMTWFARVLLPVWLAPAIVCLVVALAPTRLEPRATALRVGLALLGALLGVLAFGRFALEWWGRPGDVGAISAAIRTAVQAQ
Ga0209801_1000001132F000195AGGMDLAVSRAQYDAVRGARHLPDVLAKVLDGATRSGDGYLLHMTYEEATALNELCSWNVHTDAAGSVTPESRLFDDLVKAILTHPDY
Ga0209801_1000001165F001162GAGGVRSSWRSRLSVAAAGIGLGLGLGRGAEPQAPNYRVTYHLRAVERAGGVVGVLATAVVSGPPETDLRLSLQTGRTELEGLLGTLPEPDTVNLAGVFFARRQAGRSRRGLPLWEEDTYRRWTRVPWGGTARLYPFGPASVNQGHAVWVEVTVSREFAAGETRASEETTIVDSTVVFEARAVVPPRRVTVRMSLVRGDTASSPRVVDLVPETTGRRVRFTLGGETFDFDVTLERPDPPRTGRDSALAVGVDMVCLRLVVPGAAEPARLRCGRPDNIARRVALTGGDTLVATFAWPAVR
Ga0209801_1000001168F048909AGGMPYAGAVNLLRLHARPNVPTVDFADPPSLRGVMRGILGAALALAGPALVVVSIGARHIEWPLVTLVLTLWAAWSFYDGLYSTVVEPLSRFVTNAFTGGAMPDGTRITIDQEIAMLERLLNADPPPLPHRVLLAGIRLAEIYRTHQHDTAKAEALIGRLLERYPEAPELQHVRPR
Ga0209801_1000001203F009644GAGGMAKRRIVASLSVVVSSVAFVYCTPITTRPPFFPDRRAPVVTLNARPEPVTVGIDSLVRAESLEVAHVNVRDGYVETAWYDTKAHRSAHHERDIHDLGATVKIRFWADPWVPGQTRLTVEPVYRPRVDPSRRERDLEVILSKEHEGYKIAQDLVEKLKKRFGVPKAAG
Ga0209801_1000001231F002419N/AMPPSSATDRALQDEVIRALADAPFRASPEWRRLALADPDRVERYARFLARHFYHERIVHFFKYSRALARITGRQPEAVLKRAEFDAVLSAAVLGSRETARAVSRLVLHYVGAAEADIPFLGDLLRYEEAMMVVEAGPRIWRDAVGGAGSGERYLPERVEGTVVLELAFDLPAVLPKLLAPWTEVPLAPKRAIKLLVARSPHGRVAVARSDESVTAVVQLADGTRTLEELAAGAGIEVNALQETLQGLVDLGAVRFSTGS
Ga0209801_1000001288F068627GGAMSGGERQDRGLRLERSSATAGAIEPLLTAAEVGRLLAIPTKRVYEVVGHLAIQLAPHTLRWQLSDIAALIEGRRRNK
Ga0209801_1000001292F029701GAGGMRELLALAAVACLDFWPGEVVERRIYLTWLASRDPWFMLRTIPGTVRGVRGSVVPSSLPANPVDHVIAPRRQFESLFATLLPKDAQVEVEMPDGRRFLMPRRRPQGRPALLAGLNAREAGELLAREAHELVAFGRHIDGLLFMSNDAEKLHQGRGAPRHARSAVCAHVSQATGDRLLVVVAARVVVDYCRGQHWTEARARAVIRQLLDLCLTTKPPEPEPETSEATILYRGPQGGPAPAARAVRRRSWLPAPQ
Ga0209801_1000001293F020678GGAGGMVTEPRRSMEGLLTHVGTADCFTTSPHPALECGIVTAWWQCQVEADPAMQRQQEDE
Ga0209801_1000001378F002810N/AMMPALLVLLHGDDPRMDLLYFWAAVLLALTPVVIFGGIGIWLARKIWKERGESR
Ga0209801_1000001406F004264AGGAGMIRTVFGLMAALALPSWLAAQTPQIPNEHASDQGKAMVALHSQGVKHRATHRRGEVVPPMPGMTRNPNAATAAVPATPAVPGHGAGPTIPAKPATPAIPAHKGGQSSNHRP
Ga0209801_1000001485F009678N/AVHRQLHIQQALAGDQTQSQNIGAKIFVVAAITGPADSVGYPASFAVDSIVADSGAPAPIADNMSKVRKLVFVGRVAPRGDFVNAVPSDSTLAQAVVQLLGNFRDFLPRLPSEGLRPGAAWTDTVETTQKGSGSEVSRRTITQAVAAEWEDHLGARCLRVVTNQTFRVAGSGKNVGQPFELSGAGTGSSVAYVAVDGRYLGGEAQDSTTLTVRLTVRGVAVPVIQLTRTTVAVLP
Ga0209801_1000001487F003430AGGAMRVSVALVCLLSACQPQATRLLLLDLTLSEPAVLNGTAQPWRDEGYHVEYRRFFPHLTRADLDRYGTLIVLLGREPEAPSDALNTGDLALLTEWVLRGSVVVLGYDADGEGYLDRWTANRWLDFVGAGISIGDRLLEDTTGRTPTTTGHPQPWAEARAVGDEPLGSVYDPFPLERNNVVTARDITQVLAVTSRHAFVRAPRVPAPRPRAGVAAAARVGDGLVIVISRHALGTLGPQFRPSTAPILQLDALARTRAFLTALARWTRRPAEWAHIPPAAHATPLVLTEAPVPVELASPPGTPPREVDTMSLPVPADPKLAHATSVPDWLRQQGMRVLWTSLLATRDGRRVVRSGASLDSIVSLLDAGGFNLLAGDAGPESTDSLHTRWDEREAVRRAWADAAKRLQPTSVAWIPVLDLGNARHAAADSSRGARGEALPEPCALDSTLWSDGLTSAYGALARLAADQRTLVIAIGLDLGGPRGYSMGQDFCDAAWRRGLAGLTRGIQGGERLDTLPFPARYPALRDAGLLPRYYRALEDEVAARAAVLRDRVLKQRRDLYFAFRLTQPPADWFTLGLLRGFALPDRPILLFTSEVRTRELLALYHAHGLNLAHAVALAPAALRARDATSVKQLVFTESDGFWVSTEEPVGAGPAWRLPPDSLGRLLRRLAR
Ga0209801_1000001493F007714GAGVALVLLGAALLVAVGGALWFTRYAAHARRDPGLVYRDPATLEKLLQRGNEAESAGDRATAVTTYRFVLAVGQGGGVALEPYVAAARAGLTRLGVGDTLPGPAR
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