Scaffold Ga0209152_10006386

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10006386
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4250
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011833	Metagenome	286	Y
F016379	Metagenome	247	Y
F028762	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_100063861	F028762	N/A	IMSETLDRQERWKQQKEEADRQRMGGAYIQGFIETAAALVGEEPLFSKGYWKCASGCKPFGFGLARTPRECPSCHKQLILWVPGP
Ga0209152_100063864	F011833	GAGG	MKAFIASFVKGQVLLLAPQPILLLLIIFNKVSLYYSAPVIVSLAVLWGWFDYSGKVQRRGASVLKKLERLVDDFGWLNFQEGGGAGNEMVVSLLDKASFGSSTSTTPQLATATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLTSLESEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSETKVRALEVDPWFKTGTEISETKQSPQ
Ga0209152_100063865	F016379	N/A	MPGYPERFVKLLYGIIMAQFIVIATLLAGFSNEYLSNIYFRIWVDGTFPQLGLLLTGQVDALLIGMALGGTILLIQRVKNEASIAKGTTATLGRPSSLAENSDLLPNHATRTTIVEVARETPDQVLGELDKHDF