Scaffold Ga0209152_10004211

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10004211
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5331
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007745	Metagenome	345	Y
F008234	Metagenome	336	Y
F018154	Metagenome	236	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_100042111	F018154	N/A	MVVEAEIAKLRKFQEFLRTDDKLVFQDLLNQCKLYAPYASTMVSTIKEVPLFISMLFGQHKKIIELEKKILMLETLATKTETTVSERTVQGPVEKVEDSIVQTNRSSC
Ga0209152_100042112	F007745	GAGG	VSRAEGLEAKDPFLADYKKNLQDVIKGMKKVGPSGLQLLVQEMIRSRWIRDRRASYPYEVAWVFDRREESISGIMKKLEEEGNLEPAGLGRGKKGPIKPYKPRTLRLPRETIKKPSRPPKKDA
Ga0209152_100042116	F008234	N/A	MTELYLSFLLMYHGALTMLLGAYGVVPPYFGTNHLLANIVGLDFNSHPNPLVTASFSLPFYLGFLSIGLITTSLIVNDIVERRKTREMQGVGALFTNDS