NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209152_10003722

Scaffold Ga0209152_10003722


Overview

Basic Information
Taxon OID3300026325 Open in IMG/M
Scaffold IDGa0209152_10003722 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5703
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001912Metagenome / Metatranscriptome618Y
F023817Metagenome208N

Sequences

Protein IDFamilyRBSSequence
Ga0209152_100037223F001912AGGCGGMSLSSWDEGSDSDHVTGLNWVSRLVGHRKIPALQSAKLPRYGREGAVEVRPFTAKTGLRASEAQGLSGEAMKGNPTTVIPGVDESKPSHRTIEDLTEPPYITSGEPAFFETGR
Ga0209152_100037225F023817N/AMVNTVQKENVSIEDRVFKLKLEWMMAMDDNERRRISEEIRRLIQATPSK

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