Scaffold Ga0209152_10000564

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10000564
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16535
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009323	Metagenome / Metatranscriptome	319	Y
F016382	Metagenome / Metatranscriptome	247	Y
F024995	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000056412	F016382	AGGAG	LRSSLVEIFYESLGYCFGRVLLETLGPKVQASVYDLLARSGIKKEEISNRFDDVVQALTSTLGTCSRVVVHRTVVEMFKEYSQRLDFSYTDSLRERLTLLKEAVVANHVFPHRLRDESAFDSIEKPDWIDGPKGQAYSSLYPMKKGVKT
Ga0209152_1000056413	F024995	AGG	MHMSLRVRESSLTNPRGNVESVPGGLSSDQRFDAEKAFSSVLVSTVREAVGNALGRNVLEVLTSNGLLDDANNSKEFDRKLELLFGNGAGVLERMVVKDLNRRLGIRYDSEASFDYEKSLETARQVCFLEGRLN
Ga0209152_1000056416	F009323	AGTAGG	MVDTVVISTLYFISVFQLILQAGVVFYAYRVTKLTGSFRAWTLIIAAFTLLTIRNVVSLFLSLSLPADQLAALIDSVGPVTLILSSAVNIAAGIALFLGMFGLVKRFENQSKAPQ