Scaffold Ga0209152_10000546

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10000546
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16771
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001966	Metagenome / Metatranscriptome	610	Y
F031423	Metagenome	182	Y
F057250	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000054616	F031423	GAGG	MAATEGNGFSVRAQPARVRVAPDEYLRCPNCGSTDLKKVSLAYQEGLFYTAARTRLRAVGVGSCGPDFVIGKATTRGFHQSVLSKQLTPPVKWSYRKLILWWVVVFLSIGWIVFYINTITKNSAAVFSPPLVLWSGLSAVTFLLLLVFFWRHNQSTHKRRYSQWERSLLCQRCGTLTEQE
Ga0209152_1000054623	F001966	N/A	MEKTDPYAEWVLFATKLDPGEPPLAADEELVSAARTAWPHVLAHVRHRLLDKELGRERRALAAEIWDRVLVSVAKTRLRNKDLRSPIMDLESYLIGVFHHRFNRTLKKEQKRAETIEAFSSVLDLEQFAAATDAEWAEHLERAIAADQITDRMNPWMRKVWQRRQCDYSWKAIAAWLGITEQQAKMKFYYGLQKIRQSIMQSVKDPKSYKATEVKGRQT
Ga0209152_100005466	F057250	GGTGG	VFLSIGWIVFYINTITKNSAAVLSPPLVLWSGLSAITFLLLLVLFWRHNQFAYKRRYSQWERSFLCQRCGTLTEQEF