Scaffold Ga0209152_10000306

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10000306
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24122
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016652	Metagenome / Metatranscriptome	245	Y
F024521	Metagenome / Metatranscriptome	205	N
F037119	Metagenome	168	N
F046954	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000030617	F016652	AGGAG	MVLIGAVFVLLGIVAESLYISNEKVAYNGAAISANAYMISGLFLIILGLILTLSGARIPKIRIPHV
Ga0209152_100003062	F024521	GGA	LKKTARKSPQLLNGFPHIPFDEFPLKKSEDLVVLLEKNMPEGAKVEITPMEDSHHSPCMEEMVAIMVHDIEEGKDSSEIYTIYQFCPACQVAVRVL
Ga0209152_100003063	F037119	AGAAGG	MVRVVLELHCVKCAVKFERTFEQRRQLNYSEGEMLQLDEKACPNHCGGDWFSIEKQHPIRKFKRRFDQDT
Ga0209152_100003067	F046954	N/A	VIANSPPIIPRTDPIPVRRLPPAKSPTTEKTTMMVPQVGYWWNLKLITTALTNTSMPERINMTAEIRALAKARPKLVDRTLLPTKLLKVAPEAVYLMIPVVEALANPPMKVNIPASNEIA