Scaffold Ga0209152

Basic Information
Taxon OID	3300026325 Open in IMG/M
Scaffold ID	Ga0209152_10000094 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026325 Open in IMG/M

Scaffold ID

Ga0209152_10000094 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44427
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (74.58%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

44427

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (74.58%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008999	Metagenome	324	Y
F011834	Metagenome	286	Y
F026533	Metagenome / Metatranscriptome	197	N
F036188	Metagenome / Metatranscriptome	170	Y
F104892	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_100000944	F036188	N/A	LSEKISPQILREARTRQRDERWLNSASTPTLRRYHGKYVAVKNRRILASSPTMKGLYEKLDKLNPGMVLITRIEKPSLLVYVEFH
Ga0209152_1000009447	F104892	AGG	MTTAFKNWHSLAVGAVLLAFSVFLTSTAFGALKTAQTALQGWAMLVIAGYAFVSAIFLGASPLSENNTLTESFPGVFDHFKSFLVGGLFYAIGNFLVTVEASNLGAPEQVLTLAVALIIGGALTLVAVLVAVAAAFVRPRK
Ga0209152_1000009448	F026533	GGCGG	MPIEKKRLSKKDVQKFDPTPLYLYTEKDSLNRVTVLKESNKDAYLIAGRYSGYDNEHRLYTSLTEEESKEIERLVRIGRKDATISFL
Ga0209152_1000009451	F011834	GAG	MVIEADFYRIRLRFKRLFADPAIFDDQKNAVRRFLGYSSSSNDQTDIYQITDDISPSDNVGKSPEVAGTARYVHGGRVVRSEYLENANVTLEYADFGSGLLPSGHQKIWKRQKWGRMSFNIEEFHHEHLRIEIPAIPELYEMLRVRADPTTLVDVELPELPDYFFRSAVGYLETRLKRLAERESQTIDIYVARDLLPEEKQALERRLTRPSTKSTIYILLSKTEGSATL
Ga0209152_100000949	F008999	AGGA	LTAYSVHATRVAKKFEWFGMTIVKRYLTRNKDSRDLRDVHSNPEFYDKGIDLILNLPNAQKRTIDLKVDSYIGSDPSRKIRGLCNPDSGFILLETISQLQYDRSRKVSTNGTLLARQKADAPGWFFTSSADEVYYYFLALLNAENQLNPLYSEYVELVKGNQPTDEVENRLLRELRVDRDLLVSFSLSDARAWYDTAPETVFHGYAPAPSPSYLTLSKRVKRDLFISNGIGRSHGSIFSLVKPSSVSR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209152_10000094

Overview

Ecosystem & Geography

Associated Families

Sequences