Scaffold Ga0209152_10000064

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10000064
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53417
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (70.69%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011377	Metagenome	291	Y
F024519	Metagenome	205	N
F079881	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000006428	F024519	GGA	LTQSVKPLFIKQSAYLRVPKDVAELIDIMGAPTGAVELRIDEQGCALVYTFAKQSRAITEEPEPVEVLVAAQ
Ga0209152_100000643	F011377	GAG	MAVTTHVSVRPRSCYLPGHRRLRTQISTLFHETVNDCFRNALDGMGPTVRDVIYDLLAKKGIEQSEISSRFDDVVAVLMDSLGASARVLIYRTMTLLCQEYQVRADFSYQDSLRDRMVLLRDRVVADHLYPRRVQRNDPVFSTPNTAHFAQNPGATLSGGK
Ga0209152_1000006443	F079881	GAGG	VIEVKVAVASWRLAALAAVDWLTRHDFATACVAVAVKVRTTVEDFGDEPEMSVTIPTARAKPFVVSSVSVGLPQSPFVAPLTESVATGAVVPADMAIYLKPQVADGAHTPPVGVSPDVTCWTHSAPAL