NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1043745

Scaffold Ga0209470_1043745


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1043745 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2199
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084043Metagenome / Metatranscriptome112N
F088611Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10437451F088611GAGVSKPDLEALVTSRIAEAVQAAVDKVGRNEFETIAGINDQDLAAILSVEAVYIGVAIVTIACQINKSHNDPDPTHSSVTECLKGTTIRVPPVGGRVRSPAVQQSIDRRKFQRLGSGTSPTGPLYEKKTLRLLSFSANTAAFLILGYFLGGIAISPFIGEPSCIGVSATPPGLVPCGGSIVGLVVSAIGGIGYTYYYFV
Ga0209470_10437452F084043GAGLGKVDAQELVLDTGRMTTEDVVRYIKEYAKLRDGMAQTLRQLGIERKPEYDVPETSDLKTIGSEAETQAAEARGEYQKILSSVEAAERQVQEIEKQISTVEQLKATGFSFDEMMSRATGFRRILGKLPSKKLDAAEKGLRAVFKERAIMTTGERRKDSVYILVATSTEDASQALQTLLLYDFVPADIPSIEAADATAALTSWQAEKDRLAREKESQNSRLEALREKLAGPLNRSADNIEETLLLLRSSLRLGDGTKAAHIIARLEKPLTPVVLNSLQKDGVVELD
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Institute for Fundamental Biomedical Research
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