Scaffold Ga0209470_1007844

Overview

Basic Information

• Taxon OID: 3300026324
• Scaffold ID: Ga0209470_1007844
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6622
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001757	Metagenome / Metatranscriptome	641	N
F027142	Metagenome	195	Y
F028583	Metagenome / Metatranscriptome	191	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_10078441	F028583	N/A	MHSLIPFTIAMGHLSTEKLLASAFVGGCTVFVLRAIKTVKDRRDSNRIYEVLCRFAQDGQHTFRSSGTISRITNLTQSRISDLCSKHPALNVRNSSVICGVS
Ga0209470_10078444	F027142	AGGCGG	MPNENSQPESEEKKKREVEVRDLKPKTDPKGGATDAKKDDKRASGRTGEADFMEGVN
Ga0209470_10078448	F001757	GGAG	MMRVLKPLQDKATTGAGKKLVLPEPRRVRFLIRGEGPVSAGAVTIECCPESTKAGKFWMELATIPVPADSGLAQYYTEEASGLFRARVSQRVSNGTVTVTPLVSRGRPDRPDRTKVV