Scaffold Ga0209470_1004484

Overview

Basic Information

• Taxon OID: 3300026324
• Scaffold ID: Ga0209470_1004484
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9314
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000611	Metagenome / Metatranscriptome	987	Y
F015710	Metagenome / Metatranscriptome	252	N
F019108	Metagenome	231	N
F024389	Metagenome	206	Y
F031050	Metagenome	183	N
F035691	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_100448410	F031050	N/A	MVAFGHQTFDLLDGEAKERGVTVQELLRAVIIPDWFRTHGELLTKITMPEARPRIESLTKPEPSLDQGSKFHSNRLYLV
Ga0209470_100448414	F024389	GGA	MKKRKFLSLVIVLAIVIVTAILGYIYYAYIPRVLIDDTQTLKENHIWQFDLFVLGNRNVNITVSTAQYLVYVTFWYQQNSAATTYLINKPVTNTTQASFPVSVQQSGTYYLNVQKTEQYGETVTTVVHVEVTS
Ga0209470_100448415	F035691	GAGG	LVELWKLNNIFKLFLLSFTAVFLFLIFVLSEIQVSQYLLIVLAAGTIVYLVISFRAIPGSQGPPTTPQHLHLPSRIHLLTIILIFSLFVSSYVIARTLTTPSPFQLVKFQYLVLPNGEVLSMSPLQPSNECAWLESMNVTTQQRARQLGLPDCDYVAWYHRTSPPTLFLEFQNFTELTYNLSNTTARSTGSELLCFSLSSQSFQCWVPPARVSHLK
Ga0209470_100448416	F015710	N/A	VVFFVLAIISLSILTLYLITDFIVLALGAMDIATILNAVSRMIYLRTIPDPNERRAKAASTVKFFHIVSYACFGIAAIVFAIALNDLATDFGVMGLELTGCGTILRAVSRDIQLEGI
Ga0209470_10044842	F019108	GGA	LLTRIEVSKKQPGLLHFPGLGHFLVVVIFTGIEIVGLIEWLAISNGENHTAVLGQSYPVLQLGAISSQIGMTGFAAIVLAVFLLVEHIITQVDATGRFASGKQLVEILTFSSLESVIWLVWLELIPVNGILAITFFLVALFVEHHIADNVKKGLSFFKLSSTRAVFVGLLVLTISEVIGAVVWVGNQNLLAVLVGGSLLEHYIARNVGLIK
Ga0209470_10044846	F000611	AGTAG	MQTNMNFPTYVFATVNPGRSTNVVEELKRNSQIDLIAPVTGRYDLVLRLKPNTPHNVYQTVKEIRNISDVITTDTHTGFDGIQPTKKFENQMALGVSLLTCEHTTSENVIKQLSTIPGFVEASTVPGQFDIVALWQARTSEDIVKTSVERVSQLDGIFKSETLLAYAPFFKA