Scaffold Ga0209470_1002833

Overview

Basic Information

• Taxon OID: 3300026324
• Scaffold ID: Ga0209470_1002833
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12134
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000877	Metagenome / Metatranscriptome	851	Y
F004783	Metagenome / Metatranscriptome	423	Y
F011575	Metagenome / Metatranscriptome	289	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_100283311	F011575	AGGAG	MDGLIQIQVVVQGNAGVVGLVGLDTQGRVWYGELSGAPSPARYSIKWTKIEERP
Ga0209470_100283312	F004783	GGAGG	MASVQDQLTILLRAYRTIRFCDACLAMKMGAFPRDVREAVVLIGEGFQISSGKCSECLREKTVVCALAA
Ga0209470_10028332	F000877	GGAGG	MDRGSAMLAVVLEVYEGGKDLLPGWTLKEHAESALAKGGAEGLRRFYEASLAGSGDLVRTTLERDRRKTLESERERFMSLYLGAAR