Scaffold Ga0209470_1000331

Overview

Basic Information

• Taxon OID: 3300026324
• Scaffold ID: Ga0209470_1000331
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37973
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (45.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009776	Metagenome / Metatranscriptome	313	Y
F048407	Metagenome / Metatranscriptome	148	N
F082904	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_100033140	F048407	AGG	MNQEEILKKTNDLGLTTTPEIINQISDMVSKIAVDTMLSAGEVEALTNIMILKACDTALLDKRTIITVNDVLSSLNFVCVPFFFPCAKSNILENSRITASVITPSDVNLLESLGITKNDELDVTPTTEIANKAVSYLKGKVPSMDISSHDFELFSKRIEIWKLQANILSTLNK
Ga0209470_100033143	F009776	N/A	MTKQKKLFNKKGDSVEIKEDGKDVTLTVQYTTKVEPTVATPEDNFNDLVSVYERTGFTEEPRQ
Ga0209470_100033144	F082904	GAGG	LKLYTIALFLAPLLLINSGYAGSNDLIGTYEGKGIFSIEDMSATKKGSDYKFIGYVHNISNKTLYISDIIMEMFNSKDKLIQLIRIGGGIVIESGEKLPYKVIAHDVNFSHLDHYVVTVLNTNKSPDQLFQKVFSQVY