Scaffold Ga0209470

Basic Information
Taxon OID	3300026324 Open in IMG/M
Scaffold ID	Ga0209470_1000165 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026324 Open in IMG/M

Scaffold ID

Ga0209470_1000165 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50400
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (77.55%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

50400

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (77.55%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000653	Metagenome / Metatranscriptome	959	Y
F001078	Metagenome / Metatranscriptome	785	Y
F011247	Metagenome	293	Y
F018818	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209470_100016520	F011247	GGAG	MDAGPEGRRPMKLPETKQSWIMAGSVLLVVAGLFFAQFVIVKAAGWFKQTRERRITKATDTVTPDRLLARCGAAIEDTTTDVYPVVKRTMRYKISSQRTALFTFTRTADEPQNWVLLSMQDSLGDVSYETPEAKISALPCLDSTR
Ga0209470_100016526	F018818	GGGGG	VSKRSFYAIACSAAVGLIPVIFFLTRPGALKSPLGDTANKSWNREAIGATYVATQLREMDKTHSTLTLSYDLENNTDSDFRLDAGPGIVVLSRLEADGSLSQQEPVRLSYPVFLPARQHARLAIEITQPFAWPSEDNPAYIDKLREFVKQRLANVQEFVLFDQSSRTEVKLPGVWQELQETAQASY
Ga0209470_100016531	F000653	AGAAG	VVEQKRLTKGRAALLLILSALGGIVSATMLHGWHVYLGFAIVGIVLFIGFFLWNRKD
Ga0209470_10001659	F001078	N/A	MLNRTFIPLALLSLAFAADAAAQSAVPDTTPTIGPAKPELFKRIIANQKKGEAALDLYERIERVETRKNPNDPTPSTVKISRVIPSGTGMVRIALGPDGKPNDSAAYRADLESLARALALLVNDNRSQREALEKYAKKKKDRNELIDATHNAFLFTLVGNEQRGERMLSKYKMDPNPAFKPTTRFTSIFPKVRGLVWIDDASGEAARIEGDVTEDISIGLFLGKIYKGSHFMQERYEFVPGLWLVSFSQYDFDGRKFFSGFSVHERTFYSNYRYIGPPKEALAAIRQELEHAELDKPLAGTADQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209470_1000165

Overview

Ecosystem & Geography

Associated Families

Sequences