NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1000001

Scaffold Ga0209470_1000001


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1000001 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)224111
Total Scaffold Genes213 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)178 (83.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F004904Metagenome / Metatranscriptome419Y
F037880Metagenome / Metatranscriptome167Y
F068072Metagenome / Metatranscriptome125Y
F091706Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209470_1000001160F004904GAGMNWGAGPGLGLLTVLGYLVFLAGATRMWRNRGEFSVWFHDELSFFRRNFSRYTPAGPFYALREESRFKAIPVSFVRSITHFSRSRINGPAVLLFLGLLLFVLDFFV
Ga0209470_100000123F000528GAGMGEWKAQISLRVRQALRAELEEFAVRERRKLGNITELILEWAFEQLKTAGSTERLLKYKIRLPDTAVTGRKLHK
Ga0209470_100000124F091706AGGAMKADSFGEIFLWNREMDRLIRVLQRMESSGILSKHEMKLYEVQLEEARAGLNADFAGRMGTSERDDHSRFKRQRTAWERKTPDSNQKICLTEHTSV
Ga0209470_100000139F037880GGAGMKATPYDIFRKDLLGTPVWMEEVQDLETASLRVRELAARSPGEYFVFSQGSQEIVSSTPPRVFALAV
Ga0209470_100000181F068072GGAGGMLDSVDSDSDRDGTEFHGTLVVPLVSGGEVIIRSEAEVRGLLVLLRSKTHPEGFRYELLVTGLTDRGKSYDLTASLNPSFVDPAVQPEADSKSATE
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