NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208764_10044821

Scaffold Ga0208764_10044821


Overview

Basic Information
Taxon OID3300026321 Open in IMG/M
Scaffold IDGa0208764_10044821 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2375
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007343Metagenome353Y
F062166Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0208764_100448213F007343AGGAGMRVSDLQPKRFPASPSVELPNSDAHRLFTNDFNKSSFIEAHGDVEIVWNPQYKYWAVPAFAESRKVYGDAKQRFCEQHGSE
Ga0208764_100448218F062166GAGMIKGTKTVTINNFTFEYIPSLRVLGVTSPTGGVEIHHQLSYEKANEIVGEILEKNRNKA

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