NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209131_1007125

Scaffold Ga0209131_1007125


Overview

Basic Information
Taxon OID3300026320 Open in IMG/M
Scaffold IDGa0209131_1007125 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7099
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000442Metagenome / Metatranscriptome1132Y
F014795Metagenome260Y
F069092Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209131_10071252F000442GGAGGMLFAIVSRGKKFGTRLFPHRFNDNRYHVHLGKEGPYIPVTDHRDIPSYLANGYSLQMSDGAQSHPPSLIKPESIHGWSTNPKDIFFPTL
Ga0209131_10071254F014795N/AMVKRQRTLRKLKPPKDDEFGSRGGEADYLSKLRRLLAKMEPGDQKLVLHMAQKVARD
Ga0209131_10071257F069092AGGAGMGYPPRAVTVEQKILATLARIESKLDDTERRVKAVQQDLNRVKRIVRG

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