Scaffold Ga0209131_1006642

Overview

Basic Information

• Taxon OID: 3300026320
• Scaffold ID: Ga0209131_1006642
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7405
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053522	Metagenome / Metatranscriptome	141	N
F062199	Metagenome / Metatranscriptome	131	N
F079173	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209131_10066423	F053522	AGGA	MTQVTPTTKRTTRKAQAAPPHIPPLVADTSKPAPASEVAARTPQQVAPIPQSAMQDAAFARNWWRVVIDAERTPYDRVLADVTVWGPNEAKLRAGDLVEVVDEQSTLFALLYLVEHVPAKFIRFAELIKAPLGGVAIGRIEARGNHYAQWRGPAKRWCVIGPTGTVVRDGILSKEEADRDVTTRNMPTSMAFVSHPRM
Ga0209131_10066424	F079173	GGAG	MHRYREFGLTSEQDEVLRRAFRDGFKRAGLSFAQFLDALAWYRDHARPAADEVQLADAFAQFAADKGWPAEQRDGVLDLYRTIRDDGPTAVMQAPRPDEDRATVARTDELLRNDPARYWSDIEVQDAAFEARERLDGLAPAEGAALPRKASRDRQRIEEIEALLRDPSGDGQRRYWADAGLRTDYAHALARAHGGIDGAGGESMPSSPAMPQDVGTATAAA
Ga0209131_10066425	F062199	GGAG	MPALTQDNVLLWLHGRRLGLVGDGSFSASSGLMVDSQLVGSKRGPVISQLALGNNGVGSVAFPAAVDGDVVLFALDLTTPANVTSSFEAIISTAGQIRQTSATNLSTKNIFFQIAPAS