Scaffold Ga0209131_1006378

Overview

Basic Information

• Taxon OID: 3300026320
• Scaffold ID: Ga0209131_1006378
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7555
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028574	Metagenome / Metatranscriptome	191	Y
F082196	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209131_10063781	F028574	AGTAGG	MITHNPHGSGQADFTHPAFALGDNAHAAQGLGMTDDRYGQPAVDKAPHAIPKDAAI
Ga0209131_10063782	F082196	N/A	MRILLGSAGCECTVASSVQQGLATMEKRNFDAVVLDPQSLSSPAAEVISRINEFHPNLLKRVVLVTEEGGDSEIKELAKRHSIPHVQRKFLLQQLWGSLEMLLRPDAVLQNVTPVARLISDSLRDPLPAGVRGLQDRSRRLLFSSGSLTVDLLVEPEADSNRIALWGQILDSVRPERRFAGVSVTLQGWKGPMAQATADEFGEFQFDFNFESNLSLEMRIAETNYVTVPLPVLARSRRSAAGSS