Scaffold Ga0209131_1001538

Overview

Basic Information

• Taxon OID: 3300026320
• Scaffold ID: Ga0209131_1001538
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15990
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F002853	Metagenome / Metatranscriptome	526	Y
F004677	Metagenome / Metatranscriptome	428	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209131_100153815	F002853	GGAGG	MSRAQTQTRQLTDQERANIDALNQQFFGQQQQIGSTLLPLYQSILNNPGLSPADKAAVTGQSQGALSSAFDALQQSAQNRLARTRNSAGFGELTGELARQKGIAEAGQAQKNQLAFTNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRSNGGGFFSALGSGLGSTLGALPGAFF
Ga0209131_10015385	F004677	AGGAGG	VNHYKTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEIGALLDLWMEENSAAMLARWLMEQRERPPQALEDVPAGESLPKNGHAVSDNFFADRAVTPPANRGPA
Ga0209131_10015388	F000188	AGCAG	MSVKPKLAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALVGRAALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSETNWVNWTEQIRHRCGKRTYKPRHVPTTEIFYLL